gblup  (Golden Helix)

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Summary of QTL identified for IHNV survival DAYS

Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Accuracy and bias of breeding value predictions for IHNV resistance using three methods

Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Experimental variables and genetic parameter estimates for IHNV resistance in rainbow trout

Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Accuracy and bias of breeding value predictions for IHNV resistance using three methods

Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Genetics, Selection, Evolution : GSE

Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

doi: 10.1186/s12711-019-0489-z

Figure Lengend Snippet: Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

Techniques:

Journal: Frontiers in Plant Science

Article Title: Potential of Genome-Wide Studies in Unrelated Plus Trees of a Coniferous Species, Cryptomeria japonica (Japanese Cedar)

doi: 10.3389/fpls.2018.01322

Figure Lengend Snippet: Mean (±SE) accuracies based on all 32,036 SNPs.

Article Snippet: For male fecundity, GBLUP had higher accuracies for all populations (N-Kanto, 0.617; S-Kanto, 0.357; Kyushu, 0.634).

Techniques: